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Phakopsora pachyrhizi
PHIDIAS includes a list of programs for analysis of
Phakopsora pachyrhizi
and the interactions between host and
Phakopsora pachyrhizi:
- General Information: General information about Phakopsora pachyrhizi and Soybean Rust is described in Phinfo. Please click here for advanced topic search.
- Phakopsora pachyrhizi GBrowse: Phakopsora pachyrhizi genome browser. This program allows searching, comparison, and visualization of
Phakopsora pachyrhizi genomes and individual DNA/protein/RNA sequences. It is part of PGBrowser and also allows comparison with other genome sequences.
- Gene Query: This program searches
Phakopsora pachyrhizi and host genes. This is part of Phigen that also be used to compare with other pathogen genes.
- Protein Domains in Phakopsora pachyrhizi: This program searches
Phakopsora pachyrhizi -specific protein domains. As an integrated part of Pacodom, this program can also be used to search and compare protein domains of other pathogens
- Host-
Phakopsora pachyrhizi
Interaction Network: this program analyze networks involving the interactions between Phakopsora pachyrhizi and hosts. It is part of Phinet that also targets for many other pathogens.
- Phakopsora pachyrhizi-specific Gene Expression: Phix
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