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Documentation
BBP Work Flow:
Databases and software programs integrated in BBP:
| Resources |
Databases and analysis programs |
Comments |
| Databases |
| NCBI |
PubMed (ref.) |
Biomedical publications |
| MeSH |
Medical Subject Headings |
| RefSeq |
Reference sequences |
| Genome |
Genome summary |
| Gene |
Gene information |
| Protein |
Protein information |
| Nucleotide |
Nucleotide information |
| CDD |
conserved domains |
| COGs |
clusters of orthologous groups |
| Taxonomy |
Brucella taxonomy information |
| 3D structure DB |
3D structures (typically of related proteins) |
| Feature tables |
Protein coding genes, functional and structural RNAs, |
EBI & SIB |
Swissprot |
Annotated protein data |
| TrEMBL |
protein data |
| InterPro |
protein families, domains and functions |
| PROSITE |
protein families and domains |
TIGR |
CMR |
codon usage, EC numbers, condensed genome display, role category graph, GO terms, gene attribute, Role category gene list, RNAs, terminators |
| TIGRfam |
TIGRfam assignments |
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PFam |
protein domains and families |
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ProDom |
protein domain families |
| Software programs integrated |
| NCBI |
BLAST |
Blastn, blastp, blastx, tblastn, tblastx, PSI/PHI Blast, Mega Blast, Blast 2 sequences |
| GMOD |
GBrowse |
genome browse and analysis |
| TextPresso |
NLP text mining |
| PubSearch |
literature curation management |
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BioPerl |
Programming tools |
| More external links |
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MBGD |
Microbial Genome Database for Comparative Analysis |
Click here for a Brucella gene information search tutorial
Click here for frequently asked questions and answers
Disclaimer:
The BBP team has made every effort possible to ensure that the information in our database is current and accurate. We try to provide references and links for all the information collected here. We accept no responsibility for the accuracy, sufficiency, or reliability or for any loss and mistakes resulting from the use of the information. The information in our database may not be completely up to date.
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